Publications

Sumin Cho , Hyemin Choi , Hyundoo Jeong , Su Yeon Kwon , Eun Ji Roh , Kwang-Hun Jeong , Inho Baek , Byoung Ju Kim , Soo-Hong Lee , Inbo Han , Jae Min Cha

STEM CELLS Translational Medicine 11(10): 1072–1088 2022

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Accurate Single-Cell Clustering through Ensemble Similarity Learning

Hyundoo Jeong , Sungtae Shin , Hong Gi Yeom

Genes 12(11): 1670 2021

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F-Value Time-Frequency Analysis: Between-Within Variance Analysis

Hong Gi Yeom , Hyundoo Jeong

Frontiers in Neuroscience 15: 729449 2021

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ClusterM: A Scalable Algorithm for Computational Prediction of Conserved Protein Complexes across Multiple Protein Interaction Networks

Yijie Wang ^†, Hyundoo Jeong ^†, Byung-Jun Yoon , Xiaoning Qian

† These authors contributed equally.

BMC Genomics 21: 615 2020

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Effective Single-Cell Clustering through Ensemble Feature Selection and Similarity Measurements

Hyundoo Jeong , Navadon Khunlertgit

Computational Biology and Chemistry 87: 107283 2020

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NAPAbench 2: A Network Synthesis Algorithm for Generating Realistic Protein-Protein Interaction (PPI) Network Families

Hyun-Myung Woo , Hyundoo Jeong , Byung-Jun Yoon

PLoS ONE 15(1): e0227598 2020

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PRIME: A Probabilistic Imputation Method to Reduce Dropout Effects in Single-Cell RNA Sequencing

Hyundoo Jeong , Zhandong Liu

Bioinformatics 36(13): 4021–4029 2020

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TOPAS: Network-Based Structural Alignment of RNA Sequences

Chun-Chi Chen , Hyundoo Jeong , Xiaoning Qian , Byung-Jun Yoon

Bioinformatics 35(17): 2941–2948 2019

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Examining De Novo Transcriptome Assemblies via a Quality Assessment Pipeline

Noushin Ghaffari , Osama A. Arshad , Hyundoo Jeong , John Thiltges , Michael F. Criscitiello , Byung-Jun Yoon , Aniruddha Datta , Charles D. Johnson

IEEE/ACM Transactions on Computational Biology and Bioinformatics 15(2): 494–505 2018

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CUFID-Query: Random Walk Based Network Querying through Network Flow Estimation

Hyundoo Jeong , Xiaoning Qian , Byung-Jun Yoon

BMC Bioinformatics 18(Suppl 14): 12 2017

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SEQUOIA: Significance Enhanced Network Querying through Context-Sensitive Random Walk and Minimization of Network Conductance

Hyundoo Jeong , Byung-Jun Yoon

BMC Systems Biology 11: 20 2017

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Effective Comparative Analysis of Protein-Protein Interaction Networks by Measuring the Steady-State Network Flow Using a Markov Model

Hyundoo Jeong , Xiaoning Qian , Byung-Jun Yoon

BMC Bioinformatics 17: 395 2016

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Accurate Multiple Network Alignment through Context-Sensitive Random Walk

Hyundoo Jeong , Byung-Jun Yoon

BMC Systems Biology 9(Suppl 1): S7 2015

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Effective Estimation of Node-to-Node Correspondence between Different Graphs

Hyundoo Jeong , Byung-Jun Yoon

IEEE Signal Processing Letters 22(6): 661–665 2015

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Conference Papers

Conference papers and proceedings

8 entries

A Hybrid Approach for Enhancing Single-Cell Type Clustering

Nattaphon Suphaphimol , Hyundoo Jeong , Navadon Khunlertgit

2024 8th International Conference on Biomedical Engineering and Applications (ICBEA) 2024

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Comprehensive Updates in Network Synthesis Models to Create an Improved Benchmark for Network Alignment Algorithms

Hyun-Myung Woo , Hyundoo Jeong , Byung-Jun Yoon

9th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics (ACM-BCB) 2018

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SEQUOIA: Significance Enhanced Network Querying through Context-Sensitive Random Walk and Minimization of Network Conductance

Hyundoo Jeong , Byung-Jun Yoon

7th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics (ACM-BCB) 2016

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Accurate Multiple Network Alignment through Context-Sensitive Random Walk

Hyundoo Jeong , Byung-Jun Yoon

Asia Pacific Bioinformatics Conference (APBC) 2015

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Identifying Molecular Complexes in Biological Networks through Context Sensitive Network Querying

Hyundoo Jeong , Byung-Jun Yoon

6th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics (ACM-BCB) 2015

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A Novel Context-Sensitive Random Walk Model for Estimating Node Correspondence between Two Biological Networks

Hyundoo Jeong , Byung-Jun Yoon

5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics (ACM-BCB) 2014

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De Novo Transcriptome Assemblies and Annotation for Pacific Whiteleg Shrimp

Noushin Ghaffari , Osama A. Arshad , Hyundoo Jeong , John Thiltges , Michael F. Criscitiello , Byung-Jun Yoon , Aniruddha Datta , Charles D. Johnson

2014 IEEE Global Conference on Signal and Information Processing (GlobalSIP) 2014

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Resource Allocation for Uplink Multiuser OFDM Relay Networks with Fairness Constraints

Hyundoo Jeong , Jae Hong Lee , Hanbyul Seo

IEEE 69th Vehicular Technology Conference (VTC Spring) 2009

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Patents

Registered and pending patents

5 entries

Device and Method for RNA Secondary Structure Alignment

Hyundoo Jeong , Chun-Chi Chen , Yi-Ming Chan

Korean Patent Application No. 10-2025-0127587 2025 Pending

Method for Predicting Internal Temperature of a Motor Using a Deep Learning Model and Apparatus Supporting the Same

Hyundoo Jeong , Jun Young Lee

Korean Patent Application No. 10-2025-0144320 2025 Pending

Method and Apparatus for Cell Clustering

Hyundoo Jeong

Korean Patent No. 10-2405732 2022 Registered

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Method and System for Single-Cell RNA Sequencing

Hyundoo Jeong

Korean Patent No. 10-2393253 2022 Registered

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Method of Allocating Resources for Cooperative Diversity

Jae Hong Lee , Hyundoo Jeong , Chulhee Jang , Dongwook Choi , Junho Cho , Hanbyul Seo

Korean Patent No. 10-1523098 2015 Registered

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Books & Book Chapters

Books and book chapters

2 entries

Network-Based Structural Alignment of RNA Sequences Using TOPAS

Chun-Chi Chen , Hyundoo Jeong , Xiaoning Qian , Byung-Jun Yoon

RNA Structure Prediction, Methods in Molecular Biology, Vol. 2586, Humana 2023

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Effective Random Walk Models for Comparative Network Analysis

Hyundoo Jeong

Recent Advances in Biological Network Analysis: Comparative Network Analysis and Network Module Detection, Springer 2020

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