Publications

Sumin Cho , Hyemin Choi , Hyundoo Jeong , Su Yeon Kwon , Eun Ji Roh , Kwang-Hun Jeong , Inho Baek , Byoung Ju Kim , Soo-Hong Lee , Inbo Han , Jae Min Cha

STEM CELLS Translational Medicine 11(10): 1072–1088 2022

View

Accurate Single-Cell Clustering through Ensemble Similarity Learning

Hyundoo Jeong , Sungtae Shin , Hong Gi Yeom

Genes 12(11): 1670 2021

View

F-Value Time-Frequency Analysis: Between-Within Variance Analysis

Hong Gi Yeom , Hyundoo Jeong

Frontiers in Neuroscience 15: 729449 2021

View

ClusterM: A Scalable Algorithm for Computational Prediction of Conserved Protein Complexes across Multiple Protein Interaction Networks

Yijie Wang ^† , Hyundoo Jeong ^† , Byung-Jun Yoon , Xiaoning Qian

† These authors contributed equally.

BMC Genomics 21: 615 2020

View

Effective Single-Cell Clustering through Ensemble Feature Selection and Similarity Measurements

Hyundoo Jeong , Navadon Khunlertgit

Computational Biology and Chemistry 87: 107283 2020

View

NAPAbench 2: A Network Synthesis Algorithm for Generating Realistic Protein-Protein Interaction (PPI) Network Families

Hyun-Myung Woo , Hyundoo Jeong , Byung-Jun Yoon

PLoS ONE 15(1): e0227598 2020

View

PRIME: A Probabilistic Imputation Method to Reduce Dropout Effects in Single-Cell RNA Sequencing

Hyundoo Jeong , Zhandong Liu

Bioinformatics 36(13): 4021–4029 2020

View

TOPAS: Network-Based Structural Alignment of RNA Sequences

Chun-Chi Chen , Hyundoo Jeong , Xiaoning Qian , Byung-Jun Yoon

Bioinformatics 35(17): 2941–2948 2019

View

Examining De Novo Transcriptome Assemblies via a Quality Assessment Pipeline

Noushin Ghaffari , Osama A. Arshad , Hyundoo Jeong , John Thiltges , Michael F. Criscitiello , Byung-Jun Yoon , Aniruddha Datta , Charles D. Johnson

IEEE/ACM Transactions on Computational Biology and Bioinformatics 15(2): 494–505 2018

View

CUFID-Query: Random Walk Based Network Querying through Network Flow Estimation

Hyundoo Jeong , Xiaoning Qian , Byung-Jun Yoon

BMC Bioinformatics 18(Suppl 14): 12 2017

View

SEQUOIA: Significance Enhanced Network Querying through Context-Sensitive Random Walk and Minimization of Network Conductance

Hyundoo Jeong , Byung-Jun Yoon

BMC Systems Biology 11: 20 2017

View

Effective Comparative Analysis of Protein-Protein Interaction Networks by Measuring the Steady-State Network Flow Using a Markov Model

Hyundoo Jeong , Xiaoning Qian , Byung-Jun Yoon

BMC Bioinformatics 17: 395 2016

View

Accurate Multiple Network Alignment through Context-Sensitive Random Walk

Hyundoo Jeong , Byung-Jun Yoon

BMC Systems Biology 9(Suppl 1): S7 2015

View

Effective Estimation of Node-to-Node Correspondence between Different Graphs

Hyundoo Jeong , Byung-Jun Yoon

IEEE Signal Processing Letters 22(6): 661–665 2015

View

Conference Papers

Conference papers and proceedings

8 entries

A Hybrid Approach for Enhancing Single-Cell Type Clustering

Nattaphon Suphaphimol , Hyundoo Jeong , Navadon Khunlertgit

2024 8th International Conference on Biomedical Engineering and Applications (ICBEA) 2024

View

Comprehensive Updates in Network Synthesis Models to Create an Improved Benchmark for Network Alignment Algorithms

Hyun-Myung Woo , Hyundoo Jeong , Byung-Jun Yoon

9th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics (ACM-BCB) 2018

View

SEQUOIA: Significance Enhanced Network Querying through Context-Sensitive Random Walk and Minimization of Network Conductance

Hyundoo Jeong , Byung-Jun Yoon

7th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics (ACM-BCB) 2016

View

Accurate Multiple Network Alignment through Context-Sensitive Random Walk

Hyundoo Jeong , Byung-Jun Yoon

Asia Pacific Bioinformatics Conference (APBC) 2015

View

Identifying Molecular Complexes in Biological Networks through Context Sensitive Network Querying

Hyundoo Jeong , Byung-Jun Yoon

6th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics (ACM-BCB) 2015

View

A Novel Context-Sensitive Random Walk Model for Estimating Node Correspondence between Two Biological Networks

Hyundoo Jeong , Byung-Jun Yoon

5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics (ACM-BCB) 2014

View

De Novo Transcriptome Assemblies and Annotation for Pacific Whiteleg Shrimp

Noushin Ghaffari , Osama A. Arshad , Hyundoo Jeong , John Thiltges , Michael F. Criscitiello , Byung-Jun Yoon , Aniruddha Datta , Charles D. Johnson

2014 IEEE Global Conference on Signal and Information Processing (GlobalSIP) 2014

View

Resource Allocation for Uplink Multiuser OFDM Relay Networks with Fairness Constraints

Hyundoo Jeong , Jae Hong Lee , Hanbyul Seo

IEEE 69th Vehicular Technology Conference (VTC Spring) 2009

View

Patents

Registered and pending patents

5 entries

Device and Method for RNA Secondary Structure Alignment

Hyundoo Jeong , Chun-Chi Chen , Yi-Ming Chan

Korean Patent Application No. 10-2025-0127587 2025 Pending

Method for Predicting Internal Temperature of a Motor Using a Deep Learning Model and Apparatus Supporting the Same

Hyundoo Jeong , Jun Young Lee

Korean Patent Application No. 10-2025-0144320 2025 Pending

Method and Apparatus for Cell Clustering

Hyundoo Jeong

Korean Patent No. 10-2405732 2022 Registered

View

Method and System for Single-Cell RNA Sequencing

Hyundoo Jeong

Korean Patent No. 10-2393253 2022 Registered

View

Method of Allocating Resources for Cooperative Diversity

Jae Hong Lee , Hyundoo Jeong , Chulhee Jang , Dongwook Choi , Junho Cho , Hanbyul Seo

Korean Patent No. 10-1523098 2015 Registered

View

Books

Books and book chapters

2 entries

Network-Based Structural Alignment of RNA Sequences Using TOPAS

Chun-Chi Chen , Hyundoo Jeong , Xiaoning Qian , Byung-Jun Yoon

RNA Structure Prediction, Methods in Molecular Biology, Vol. 2586, Humana 2023

View Website

Effective Random Walk Models for Comparative Network Analysis

Hyundoo Jeong

Recent Advances in Biological Network Analysis: Comparative Network Analysis and Network Module Detection, Springer 2020

View Website