Software

A zero-configuration tool that uses computer vision to predict 3′-end trimming positions from FastQC quality reports for 16S rRNA sequencing.

A deep-learning method and web application for accurate RNA structural alignment using a residual encoder-decoder network.

A graph-autoencoder-based method for single-cell clustering through ensemble cell-to-cell similarity learning.

A deep-learning web application based on long short-term memory networks for efficient piRNA detection in large-scale genome databases.

A single-cell clustering method that constructs an ensemble cell-to-cell similarity network for robust cluster identification.

A probabilistic imputation method for reducing dropout effects in single-cell RNA sequencing data.

A benchmark and network synthesis resource for generating realistic protein-protein interaction network families and evaluating network alignment algorithms.

An ensemble feature-selection and similarity-learning method for robust clustering of single-cell RNA sequencing data.

A scalable algorithm for predicting conserved protein complexes across multiple protein-protein interaction networks.

A network-based algorithm for fast and accurate structural alignment of RNA sequences using sequence and predicted secondary-structure information.

A network alignment method that estimates protein correspondence using steady-state network flow over integrated protein-protein interaction networks.